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publications
Performance evaluation and tuning of biopig for genomic analysis
Published in In the proceedings of Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems, 2015
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Recommended citation: Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng, "Performance evaluation and tuning of biopig for genomic analysis." In the proceedings of Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems, 2015.
A case study of tuning MapReduce for efficient Bioinformatics in the cloud
Published in Parallel Computing, 2017
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Recommended citation: Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng, "A case study of tuning MapReduce for efficient Bioinformatics in the cloud." Parallel Computing, 2017.
Construction and optimization of a large gene Coexpression network in maize using RNA-Seq data
Published in Plant physiology, 2017
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Recommended citation: Ji Huang, Stefania Vendramin, Lizhen Shi, Karen McGinnis, "Construction and optimization of a large gene Coexpression network in maize using RNA-Seq data." Plant physiology, 2017.
SpaRC: scalable sequence clustering using Apache Spark
Published in Bioinformatics, 2018
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Recommended citation: Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang, "SpaRC: scalable sequence clustering using Apache Spark." Bioinformatics, 2018.
A Vector Representation of DNA Sequences Using Locality Sensitive Hashing
Published in bioRxiv, 2019
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Recommended citation: Lizhen Shi, Bo Chen, "A Vector Representation of DNA Sequences Using Locality Sensitive Hashing." bioRxiv, 2019.
Deconvolute individual genomes from metagenome sequences through short read clustering
Published in BioRxiv, 2019
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Recommended citation: Kexue Li, Lili Wang, Lizhen Shi, Li Deng, Zhong Wang, "Deconvolute individual genomes from metagenome sequences through short read clustering." BioRxiv, 2019.
Computational Strategies for Scalable Genomics Analysis
Published in Genes, 2019
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Recommended citation: Shi, Lizhen and Wang, Zhong, "Computational Strategies for Scalable Genomics Analysis." Genes, 2019.
talks
Talk 1 on Relevant Topic in Your Field
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Conference Proceeding talk 3 on Relevant Topic in Your Field
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This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
CGS 3416: Java for Non Majors, Spring 2019
Undergraduate course, Computer Science Department, FSU, 2019
This course is an introduction to software engineering, using the Java programming language. The course is designed for students with no or little programming experience. Students will learn the fundamentals of Java and object-oriented programming (OOP) using Java. The focus is on developing high quality, working software that solves real problems.
CGS 2060: Computer Fluency, Summer 2019
Undergraduate course, Computer Science Department, FSU, 2019
An introduction to information processing and computer applications. Hands-on experience with microcomputer applications in word processing, spreadsheets and presentation software using current versions of Microsoft’s Office Suite. Concepts include an introduction to computers, hardware, software, internet technologies, e-commerce, mobile devices, and security. This course satisifies the University’s Computer Skills Competency Requirement.
CGS 3416: Java for Non Majors, Fall 2019
Undergraduate course, Computer Science Department, FSU, 2019
This course is an introduction to software engineering, using the Java programming language. The course is designed for students with no or little programming experience. Students will learn the fundamentals of Java and object-oriented programming (OOP) using Java. The focus is on developing high quality, working software that solves real problems. Find the course website at CGS3416 Fall 2019