Computational Strategies for Scalable Genomics Analysis
Published in Genes, 2019
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Recommended citation: Shi, Lizhen and Wang, Zhong, "Computational Strategies for Scalable Genomics Analysis." Genes, 2019.
Publications
Deconvolute individual genomes from metagenome sequences through short read clustering
Published in BioRxiv, 2019
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Recommended citation: Kexue Li, Lili Wang, Lizhen Shi, Li Deng, Zhong Wang, "Deconvolute individual genomes from metagenome sequences through short read clustering." BioRxiv, 2019.
A Vector Representation of DNA Sequences Using Locality Sensitive Hashing
Published in bioRxiv, 2019
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Recommended citation: Lizhen Shi, Bo Chen, "A Vector Representation of DNA Sequences Using Locality Sensitive Hashing." bioRxiv, 2019.
SpaRC: scalable sequence clustering using Apache Spark
Published in Bioinformatics, 2018
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Recommended citation: Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang, "SpaRC: scalable sequence clustering using Apache Spark." Bioinformatics, 2018.
Construction and optimization of a large gene Coexpression network in maize using RNA-Seq data
Published in Plant physiology, 2017
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Recommended citation: Ji Huang, Stefania Vendramin, Lizhen Shi, Karen McGinnis, "Construction and optimization of a large gene Coexpression network in maize using RNA-Seq data." Plant physiology, 2017.
A case study of tuning MapReduce for efficient Bioinformatics in the cloud
Published in Parallel Computing, 2017
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Recommended citation: Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng, "A case study of tuning MapReduce for efficient Bioinformatics in the cloud." Parallel Computing, 2017.
Performance evaluation and tuning of biopig for genomic analysis
Published in In the proceedings of Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems, 2015
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Recommended citation: Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng, "Performance evaluation and tuning of biopig for genomic analysis." In the proceedings of Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems, 2015.